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Posted by Bloguero_Connor on Mon 7 Jul 15:19
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  1. CLUSTAL W (1.83) multiple sequence alignment
  2.  
  3.  
  4. Test1seq             ------------------------------------------------------------
  5. AT3G20900.1-SEQ      ATGAACAAAGTAGCGAGGAAGAACAAAACATCAGGTGAACAAAAAAAAAACTCAATCCAC
  6. AT3G20900.1-CDS      ------------------------------------------------------------
  7.                                                                                  
  8.  
  9. Test1seq             -----AGTTACAATAACTGACGAAGCTAAGTAGGCTACTAATTAACGTCATCAACCTAAT
  10. AT3G20900.1-SEQ      ATCAAAGTTACAATAACTGACGAAGCTAAGTAGGCTAGAAATTAAAGTCATCAACCTAAT
  11. AT3G20900.1-CDS      ------------------------------------------------------------
  12.                                                                                  
  13.  
  14. Test1seq             ACATAGCACTTAGAAAAAAGTGAAGTAAGAAAATATAAAATAATAAAAGGGTGGGTTATC
  15. AT3G20900.1-SEQ      ACATAGCACTTAGAAAAAAGTGAAGCAAGAAAATATAAAATAATAAAAGGGTGGGTTATC
  16. AT3G20900.1-CDS      ------------------------------------------------------------
  17.                                                                                  
  18.  
  19. Test1seq             AATTGATAGTGTAAATCATCGTATTCCGGTGATATACCCTACCACAAAAACTCAAACCGA
  20. AT3G20900.1-SEQ      AATTGATAGTGTAAATCATAGTTGATTTTTGATATACCCTACCACAAAAACTCAAACCGA
  21. AT3G20900.1-CDS      ------------------------------------------------------------
  22.                                                                                  
  23.  
  24. Test1seq             CTTGATTCAAATCATCTCAATAAATTAGCGCCAAAATAATGAAAAAAATAATAACAAACA
  25. AT3G20900.1-SEQ      CTTGATTCAAATCATCTCAAAAAACAAGCGCCAAAATAATGAAAAAAATAATAACAAAAA
  26. AT3G20900.1-CDS      ------------------------------------------------------------
  27.                                                                                  
  28.  
  29. Test1seq             AAAACAAACCAAAATAAGAAAAAACATTACGCAAAACATAATAATTTACTCTTCGTTATT
  30. AT3G20900.1-SEQ      CAAACAAACCAAAATAAGAAAAAACATTACGCAAAACATAATAATTTACTCTTCGTTATT
  31. AT3G20900.1-CDS      ------------------------------------------------------------
  32.                                                                                  
  33.  
  34. Test1seq             GTATTAACAAATCAAAGAGCTGAATTTTGATCACCTGCTAATACTACTTTCTGTATTGAT
  35. AT3G20900.1-SEQ      GTATTAACAAATCAAAGAGATGAATTTTGATCACCTGCTAATACTACTTTCTGTATTGAT
  36. AT3G20900.1-CDS      ------------------------------------------------------------
  37.                                                                                  
  38.  
  39. Test1seq             CCTATATCAACGTAAACAAAGATACTAATAATTAACTAAAAGTACGTTCATCGATCGTGT
  40. AT3G20900.1-SEQ      CCTATATCAAAAAAAAAAAAGATACTAATAATTAACTAAAAGTACGTTCATCGATCGTGT
  41. AT3G20900.1-CDS      ------------------------------------------------------ATGAAC
  42.                                                                              *   
  43.  
  44. Test1seq             TCGTTGACGAAGAAGAGCTCTATCTCCGGCGGAGCAAAGAAAACGATCTGTCTCCGTCGT
  45. AT3G20900.1-SEQ      GCGTTGACGAAGAAGAGCTCTATCTCCGGCGGAGCAAAGAAAACGATCTGTCTCCGTCGT
  46. AT3G20900.1-CDS      AAAGTAGCGAGGAAGAACAAAACATC------AGCAAAGAAAACGATCTGTCTCCGTCGT
  47.                          *  *** ***** *   *  **      ****************************
  48.  
  49. Test1seq             AACACACGGTCGCTAGAGAAACTTTGCTTCTTCGGCGCCGGTGGACACGTCAGCATCTCC
  50. AT3G20900.1-SEQ      AACACACAGTTTTTCGAGACCCTTTGCTTCTTCGGCGCCGGTGGACACGTCAGCATCTCC
  51. AT3G20900.1-CDS      AACACACAGTTTTTCGAGACCCTTTGCTTCTTCGGCGCCGGTGGACACGTCAGCATCTCC
  52.                      ******* **   * ****  ***************************************
  53.  
  54. Test1seq             GGTATCCTAGACTTCTTGGCTTTCGGGGTACAACAACCGCGTGGTGACGTCAGCACCGCT
  55. AT3G20900.1-SEQ      GGTATCCTAGACTTCTTGGCTTTCGGGGTACAACAACCGCCTGGTGACGTCAGCACCGCT
  56. AT3G20900.1-CDS      GGTATCCTAGACTTCTTGGCTTTCGGGGTACAACAACCGCCTGGTGACGTCAGCACCGCT
  57.                      **************************************** *******************
  58.  
  59. Test1seq             GCTGGGGATGGAGAGGGAACAGAGTT-
  60. AT3G20900.1-SEQ      GCTGGGGATGGAGAGGGAACAGAGTAG
  61. AT3G20900.1-CDS      GCTGGGGATGGAGAGGGAACAGAGTAG
  62.                      *************************

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